{
  "_id": "6a1fec07b401979e73440905",
  "Package": "ir",
  "Title": "Functions to Handle and Preprocess Infrared Spectra",
  "Version": "0.4.2",
  "Authors@R": "person(given = \"Henning\",\nfamily = \"Teickner\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"henning.teickner@uni-muenster.de\",\ncomment = c(ORCID = \"0000-0002-3993-1182\"))",
  "Description": "Functions to import and handle infrared spectra (import\nfrom '.csv' and Thermo Galactic's '.spc', baseline correction,\nbinning, clipping, interpolating, smoothing, averaging, adding,\nsubtracting, dividing, multiplying, atmospheric correction,\n'tidyverse' methods, plotting).",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "RdMacros": "Rdpack",
  "Date": "2026-01-29",
  "Roxygen": "list(markdown = TRUE)",
  "URL": "https://henningte.github.io/ir/, https://github.com/henningte/ir/",
  "BugReports": "https://github.com/henningte/ir/issues/",
  "Language": "en-US",
  "Config/pak/sysreqs": "cmake make libicu-dev libjpeg-dev libpng-dev\nlibuv1-dev libxml2-dev libudunits2-dev",
  "Repository": "https://henningte.r-universe.dev",
  "Date/Publication": "2026-02-03 21:33:55 UTC",
  "RemoteUrl": "https://github.com/henningte/ir",
  "RemoteRef": "HEAD",
  "RemoteSha": "6f8d6757a03e818dbfc69f42f59eb0425f41d755",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 08:51:27 UTC",
    "User": "root"
  },
  "Author": "Henning Teickner [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-3993-1182>)",
  "Maintainer": "Henning Teickner <henning.teickner@uni-muenster.de>",
  "MD5sum": "d20ce376f15000ec924c36f5c5e98272",
  "_user": "henningte",
  "_type": "src",
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  "_created": "2026-06-03T08:51:27.000Z",
  "_published": "2026-06-03T08:55:35.770Z",
  "_distro": "noble",
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  "_buildurl": "https://github.com/r-universe/henningte/actions/runs/26873871050",
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    },
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  ],
  "_tags": [],
  "_topics": [
    "chemometrics",
    "infrared",
    "infrared-spectra",
    "ir-package",
    "mid-infrared-spectra",
    "spectroscopy"
  ],
  "_stars": 9,
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    "name": "Henning Teickner"
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  "_downloads": {
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ir"
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  "_devurl": "https://github.com/henningte/ir",
  "_pkgdown": "https://henningte.github.io/ir/",
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
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    "extra/readme.md",
    "manual.pdf"
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  "_homeurl": "https://github.com/henningte/ir",
  "_realowner": "henningte",
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  "_releases": [
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      "version": "0.2.0",
      "date": "2022-04-25"
    },
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      "version": "0.2.1",
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    },
    {
      "version": "0.4.1",
      "date": "2025-04-06"
    },
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      "version": "0.4.2",
      "date": "2026-02-03"
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  ],
  "_exports": [
    "%>%",
    "ir_add",
    "ir_as_ir",
    "ir_average",
    "ir_bc",
    "ir_bc_polynomial",
    "ir_bc_rubberband",
    "ir_bc_sg",
    "ir_bin",
    "ir_clip",
    "ir_correct_atmosphere",
    "ir_divide",
    "ir_drop_spectra",
    "ir_export_prepare",
    "ir_flat_clean",
    "ir_flatten",
    "ir_get_intensity",
    "ir_get_spectrum",
    "ir_get_wavenumberindex",
    "ir_identify_empty_spectra",
    "ir_import_csv",
    "ir_import_spc",
    "ir_interpolate",
    "ir_interpolate_region",
    "ir_multiply",
    "ir_new_ir",
    "ir_new_ir_flat",
    "ir_normalise",
    "ir_normalize",
    "ir_remove_missing",
    "ir_sample_prospectr",
    "ir_scale",
    "ir_smooth",
    "ir_stack",
    "ir_subtract",
    "ir_to_absorbance",
    "ir_to_transmittance",
    "ir_variance_region"
  ],
  "_datasets": [
    {
      "name": "ir_sample_data",
      "title": "Sample object of class 'ir'",
      "object": "ir_sample_data",
      "class": [
        "ir",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "id_measurement",
        "id_sample",
        "sample_type",
        "sample_comment",
        "klason_lignin",
        "holocellulose",
        "spectra"
      ],
      "rows": 58,
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "arrange.ir",
      "title": "Arrange rows in 'ir' objects by column values",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "arrange.ir"
      ]
    },
    {
      "page": "bind",
      "title": "Bind rows of 'ir' objects",
      "topics": [
        "bind",
        "cbind.ir",
        "rbind.ir"
      ]
    },
    {
      "page": "distinct.ir",
      "title": "Subset distinct/unique rows in 'ir' objects",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "distinct.ir"
      ]
    },
    {
      "page": "extract.ir",
      "title": "Extract a character column in an 'ir' object into multiple columns using regular expression groups",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "extract.ir"
      ]
    },
    {
      "page": "filter-joins",
      "title": "Filtering joins for an 'ir' object",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "anti_join.ir",
        "filter-joins",
        "semi_join.ir"
      ]
    },
    {
      "page": "filter.ir",
      "title": "Subset rows in 'ir' objects using column values",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "filter.ir"
      ]
    },
    {
      "page": "group_by",
      "title": "Group rows in 'ir' objects by one or more variables",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "group_by",
        "group_by.ir",
        "ungroup.ir"
      ]
    },
    {
      "page": "ir_add",
      "title": "Add infrared spectra",
      "topics": [
        "ir_add"
      ]
    },
    {
      "page": "ir_as_ir",
      "title": "Converts an object to class 'ir'",
      "topics": [
        "ir_as_ir",
        "ir_as_ir.data.frame",
        "ir_as_ir.hyperSpec",
        "ir_as_ir.ir",
        "ir_as_ir.ir_flat",
        "ir_as_ir.Spectra"
      ]
    },
    {
      "page": "ir_average",
      "title": "Averages infrared spectra within groups",
      "topics": [
        "ir_average"
      ]
    },
    {
      "page": "ir_bc",
      "title": "Performs baseline correction on infrared spectra",
      "topics": [
        "ir_bc"
      ]
    },
    {
      "page": "ir_bc_polynomial",
      "title": "Performs baseline correction on infrared spectra using a polynomial",
      "topics": [
        "ir_bc_polynomial"
      ]
    },
    {
      "page": "ir_bc_rubberband",
      "title": "Performs baseline correction on infrared spectra using a rubberband algorithm",
      "topics": [
        "ir_bc_rubberband"
      ]
    },
    {
      "page": "ir_bc_sg",
      "title": "Performs baseline correction on infrared spectra using a Savitzky-Golay baseline",
      "topics": [
        "ir_bc_sg"
      ]
    },
    {
      "page": "ir_bin",
      "title": "Bins infrared spectra",
      "topics": [
        "ir_bin"
      ]
    },
    {
      "page": "ir_clip",
      "title": "Clips infrared spectra to new wavenumber ranges",
      "topics": [
        "ir_clip"
      ]
    },
    {
      "page": "ir_correct_atmosphere",
      "title": "Corrects artifacts in a spectrum based on reference spectra of the artifact compound",
      "topics": [
        "ir_correct_atmosphere"
      ]
    },
    {
      "page": "ir_divide",
      "title": "Divide infrared spectra or divide infrared spectra by a numeric value",
      "topics": [
        "ir_divide"
      ]
    },
    {
      "page": "ir_drop_spectra",
      "title": "Drops the column 'spectra' from an object is of class 'ir'",
      "topics": [
        "ir_drop_spectra"
      ]
    },
    {
      "page": "ir_export_prepare",
      "title": "Prepares 'ir' objects for export to 'csv'",
      "topics": [
        "ir_export_prepare"
      ]
    },
    {
      "page": "ir_flat_clean",
      "title": "Cleans objects of class 'ir_flat'",
      "topics": [
        "ir_flat_clean"
      ]
    },
    {
      "page": "ir_flatten",
      "title": "Converts objects of class 'ir' to objects of class 'ir_flat'",
      "topics": [
        "ir_flatten"
      ]
    },
    {
      "page": "ir_get_intensity",
      "title": "Extracts intensities from spectra in an 'ir' object for specific spectral channels",
      "topics": [
        "ir_get_intensity"
      ]
    },
    {
      "page": "ir_get_spectrum",
      "title": "Extracts selected spectra from an object of class 'ir'",
      "topics": [
        "ir_get_spectrum"
      ]
    },
    {
      "page": "ir_get_wavenumberindex",
      "title": "Gets the index of a defined wavenumber value for a spectrum",
      "topics": [
        "ir_get_wavenumberindex"
      ]
    },
    {
      "page": "ir_identify_empty_spectra",
      "title": "Identifies empty spectra in an 'ir' object",
      "topics": [
        "ir_identify_empty_spectra"
      ]
    },
    {
      "page": "ir_import_csv",
      "title": "Imports infrared spectra from various files",
      "topics": [
        "ir_import_csv"
      ]
    },
    {
      "page": "ir_import_spc",
      "title": "Imports infrared spectra from Thermo Galactic's files",
      "topics": [
        "ir_import_spc"
      ]
    },
    {
      "page": "ir_interpolate",
      "title": "Interpolates intensity values of infrared spectra in an 'ir' object for new wavenumber values",
      "topics": [
        "ir_interpolate"
      ]
    },
    {
      "page": "ir_interpolate_region",
      "title": "Interpolates selected regions in infrared spectra in an 'ir' object",
      "topics": [
        "ir_interpolate_region"
      ]
    },
    {
      "page": "ir_multiply",
      "title": "Multiply infrared spectra or multiply infrared spectra with a numeric value",
      "topics": [
        "ir_multiply"
      ]
    },
    {
      "page": "ir_new_ir",
      "title": "Creates an object of class 'ir'",
      "topics": [
        "ir_new_ir"
      ]
    },
    {
      "page": "ir_new_ir_flat",
      "title": "Creates an object of class 'ir_flat'",
      "topics": [
        "ir_new_ir_flat"
      ]
    },
    {
      "page": "ir_normalize",
      "title": "Normalizes infrared spectra in an 'ir' object",
      "topics": [
        "ir_normalise",
        "ir_normalize"
      ]
    },
    {
      "page": "ir_remove_missing",
      "title": "Removes empty data values in an object of class 'ir'",
      "topics": [
        "ir_remove_missing"
      ]
    },
    {
      "page": "ir_sample_data",
      "title": "Sample object of class 'ir'",
      "topics": [
        "ir_sample_data"
      ]
    },
    {
      "page": "ir_sample_prospectr",
      "title": "Wrapper to sampling functions from the 'prospectr' package",
      "topics": [
        "ir_sample_prospectr"
      ]
    },
    {
      "page": "ir_scale",
      "title": "Scales spectra in an 'ir' object",
      "topics": [
        "ir_scale"
      ]
    },
    {
      "page": "ir_smooth",
      "title": "Smooths infrared spectra in an 'ir' object",
      "topics": [
        "ir_smooth"
      ]
    },
    {
      "page": "ir_stack",
      "title": "Stacks a matrix or data frame with spectra into a list column",
      "topics": [
        "ir_stack"
      ]
    },
    {
      "page": "ir_subtract",
      "title": "Subtract infrared spectra",
      "topics": [
        "ir_subtract"
      ]
    },
    {
      "page": "ir_to_transmittance",
      "title": "Converts absorbance spectra to transmittance spectra or vice versa",
      "topics": [
        "ir_to_absorbance",
        "ir_to_transmittance"
      ]
    },
    {
      "page": "ir_variance_region",
      "title": "Computes the variance of a spectrum in an 'ir' object in a given region",
      "topics": [
        "ir_variance_region"
      ]
    },
    {
      "page": "mutate",
      "title": "Mutate an 'ir' object by adding new or replacing existing columns",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "mutate",
        "mutate.ir",
        "transmute.ir"
      ]
    },
    {
      "page": "mutate-joins",
      "title": "Mutating joins for an 'ir' object",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "full_join.ir",
        "inner_join.ir",
        "left_join.ir",
        "mutate-joins",
        "right_join.ir"
      ]
    },
    {
      "page": "nest",
      "title": "Nest and un-nest an 'ir' object",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "nest",
        "nest.ir",
        "unnest.ir"
      ]
    },
    {
      "page": "Ops.ir",
      "title": "Arithmetic operations for 'ir' objects",
      "topics": [
        "Ops.ir"
      ]
    },
    {
      "page": "pivot_longer.ir",
      "title": "Pivot an 'ir' object from wide to long",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "pivot_longer.ir"
      ]
    },
    {
      "page": "pivot_wider.ir",
      "title": "Pivot an 'ir' object from wide to long",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "pivot_wider.ir"
      ]
    },
    {
      "page": "plot.ir",
      "title": "Plots an object of class 'ir'",
      "topics": [
        "plot.ir"
      ]
    },
    {
      "page": "range",
      "title": "Get the minima/maxima/range/median of x axis values or intensity values of infrared spectra",
      "topics": [
        "max.ir",
        "median.ir",
        "min.ir",
        "range",
        "range.ir"
      ]
    },
    {
      "page": "rename",
      "title": "Rename columns in 'ir' objects",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "rename",
        "rename.ir",
        "rename_with.ir"
      ]
    },
    {
      "page": "rep.ir",
      "title": "Replicate ir objects",
      "topics": [
        "rep.ir"
      ]
    },
    {
      "page": "rowwise.ir",
      "title": "Group input 'ir' objects by rows",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "rowwise.ir"
      ]
    },
    {
      "page": "select.ir",
      "title": "Subset columns in 'ir' objects using column names and types",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "select.ir"
      ]
    },
    {
      "page": "separate_rows.ir",
      "title": "Separate a collapsed column in an 'ir' object into multiple rows",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "separate_rows.ir"
      ]
    },
    {
      "page": "separate.ir",
      "title": "Separate a character column in an 'ir' object into multiple columns with a regular expression or numeric locations",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "separate.ir"
      ]
    },
    {
      "page": "slice",
      "title": "Subset rows in 'ir' objects using their positions",
      "concept": [
        "tidyverse"
      ],
      "topics": [
        "slice",
        "slice.ir",
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